1 Cytometry

1.1 MG subtypes Box Plots

1.1.1 MG subtypes for different patients in ND.REC

## Warning in dev.off(): unable to open TIFF file
## '/home/frederik/Maxime_ND/maxime_figures/30_MG_sample_proportions.tiff'
## png 
##   2

1.1.2 MG subtypes for patients across different regions

## Warning in dev.off(): unable to open TIFF file
## '/home/frederik/Maxime_ND/maxime_figures/45_MG_sample_proportions_regions.tiff'
## png 
##   2

1.1.3 MG subtypes for patients across different main and neftel regions

1.1.4 delta MG subtypes

1.2 MG subtypes proportions over interval times

1.2.1 MG subtypes across recurrence rates (fast <1 year, intermediate 1-2 years, slow >2 year)

2 Statistical Tests

##MG density across survival groups

2.1 MG subtypes proprtions across regions in ND.REC

2.2 MG subtypes proprtions across main and neftel regions in ND.REC

2.3 MG subtypes proprtions across regions

## png 
##   2

2.4 MG subtypes proprtions across regions

2.5 MG-subtype across different Neftel-regions, survival groups and ND/REC (test was not applicable on “CD206”,“CD44”,“HLADR”)

## # A tibble: 270 × 16
##    predicted.celltype3 region   neftel .y.   group1 group2    n1    n2 statistic
##    <chr>               <chr>    <chr>  <chr> <chr>  <chr>  <int> <int>     <dbl>
##  1 CD163               High Tu… AC     P     STS    MTS        3    64     152  
##  2 CD163               High Tu… AC     P     STS    LTS        3    30      70.5
##  3 CD163               High Tu… AC     P     MTS    LTS       64    30     860. 
##  4 CD163               High Tu… ACE    P     STS    MTS        2    36      23.5
##  5 CD163               High Tu… ACE    P     STS    LTS        2    16      11  
##  6 CD163               High Tu… ACE    P     MTS    LTS       36    16     324  
##  7 CD163               High Tu… MES    P     STS    MTS        1    44       9.5
##  8 CD163               High Tu… MES    P     STS    LTS        1    17       3  
##  9 CD163               High Tu… MES    P     MTS    LTS       44    17     379  
## 10 CD163               High Tu… NPC    P     STS    MTS        1    25      15  
## # … with 260 more rows, and 7 more variables: p <dbl>, p.adj <dbl>,
## #   p.adj.signif <chr>, y.position <dbl>, groups <named list>, xmin <dbl>,
## #   xmax <dbl>

2.6 ‘PDL1’ expression MG across ND/REC for different survival groups

2.7 ‘PDL1’ expression MG across ND/REC for different survival groups and regions

2.8 ‘PDL1’ expression MG across ND/REC for different regions

2.9 ‘PDL1’ expression MG across different survival group in different regions

2.10 Distances MG across regions and survival groups

## Warning: Removed 1250 rows containing non-finite values (`stat_boxplot()`).

## NULL